Create templates for model evaluation

Create templates of code (r-scripts and bash job-submission script) to read, post-process and evaluate model results.

Usage

template(
  root,
  template = "WRF",
  case = "case",
  env = "rspatial",
  scheduler = "SBATCH",
  partition = "main",
  project = "PROJECT",
  verbose = TRUE
)

Arguments

root

directory to create the template

template

Character; One of of the following:

argument	TYPE	MODEL/OBS	OBSERVATION	WRF
post-process	WRF	METAR and INMET	WRF-3	post-process
WRF triple nested	METAR	WRF-Chem	post-process	WRF-Chem
METAR, AQS in Brazil and AERONET	EXP	post-process	WRF-Chem	METAR, PBL variables and composition
CAMX	post-process	CAMx	AERONET	CAMX-3
post-process	CAMx triple nested	AERONET	NCO	post-process
WRF	Satellite	terra	post-process	WRF
Satellite	SAT	evaluation	WRF	Satellite (GPCP)
MET	evaluation	WRF	METAR	MET-3
evaluation	WRF triple nested	METAR	AQ	evaluation
WRF or CAMx	O3, Max O3 and PM2.5	AQS_BR	download	observations
AQS in Brazil for SP and RJ	METAR	downlaad	observations	METAR from ASOS
INMET	pre-processing	observations	INMET (automatic and conventional)	merge
pre-processing	observations	merge INMET (automatic and conventional)	ISD	pre-processing

case

case to be evaluated

env

name of the conda environment

scheduler

job scheduler used (SBATCH or PBS)

partition

partition name

project

project name

verbose

display additional information

Value

no value returned, create folders and other template scripts

Examples

temp <- file.path(tempdir(),"POST")
template(root = temp,template = 'WRF', case = 'WRF-only')
#>  folder  /tmp/RtmpujwLbD/POST/WRF/WRF-only : link wrf output files here!
#>  bash  /tmp/RtmpujwLbD/POST/post-R_wrf.sh : post processing job script
#>  r-script /tmp/RtmpujwLbD/POST/extract_metar.R : source code to extract metar using eva3dm::extract_serie()
#>  r-script /tmp/RtmpujwLbD/POST/extract_inmet.R : source code to extract inmet using eva3dm::extract_serie()